How to decode bit flags

Principle

The idea is very simple :
  • Define a mask having the same size in bytes than the value to decode ( let’s call it “v” ) and set the bits to extract to 1 and the others to 0
  • Apply a logical AND operation between it and v
  • Then shift the result right n times where n is the index ( starting from 0 ) of the first significant bit.

Example

Let’s apply this method on a real example, taken from the CALIPSO 05kmCLay product. We will extract the Ice/Water Phase of a cloud layer. This information is defined in the “Feature_Classification_Flags” dataset, and the phase bit flags are set at indexes 5-6 ( starting from 0 ). For a complete description of the flags definition, please refer to the CALIPSO Data Products Catalog. Be careful, the bits numbering starts from 1 in this document. The value to decode is read in the file CAL_LID_L2_05kmCLay-Prov-V2-02.2009-01-01T00-07-47ZN.hdf. Its value for the layer number 3 of the profile 3481 is 39898, on 2 bytes ( 1001101111011010 in binary format ) Define the bits selection mask We set a 2 bytes long mask, with only the bits 5 and 6 set to 1. The mask will be, in binary format :

ibit | 15 14 13 12 11 10 9 8 7 6 5 4 3 2 1 0 |
 --------------------------------------------------------- 
mask | 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 | => 96 in decimal format 
Logical AND between the mask and the value All bits set to 0 in the mask will be 0 in the result, and all the bits set to 1 will give the same in the result than in the value
value | 1 0 0 1 1 0 1 1 1 1 0 1 1 0 1 0 |
 AND 
mask | 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 | 
--------------------------------------------------------- 
result | 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 | => 64 
Shift right to remove unsignificant bits Now, to have only the value of the bits in red, the result is shifted right 5 times ( 5 is the number of unsignificant bits on the right )
Shift 1 time | 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 | 
Shift 2 times | 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 |
 ... 
Shift 5 times | 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 | => 2 

Synopsis

The way to implement this is different for all languages, but the C/C++/python way is :
flag = ( value & mask ) >> n

Source

Here is an implementation in PYTHON, as a command-line tool. It offers 2 ways to specify the bits to read :
  • by specifying the first bit position and the flag width
  • by specifying explicitly the bit selection mask
Source is printed below, but can also be downloaded as a package : Get_bitflag.v1.0.0.tar.gz
 # -*- coding: utf-8 -*-
 
 """
 Description :
 -------------
     Extracts the bits from a bitflag and prints it out in a binary format
 
 Usage :
 -------
     The tool can be used in 2 ways :
 
     1) by specifying the first bit position and the flag width
 
             python get_bitflag <flag-word> <1st-bit-index> <width>
 
        where :
 
         <flag-word>  : the value that contains the bits to extract
         <first_bit>  : the position of the first significant bit ( starting from 0 )
         <flag_width> : the number of bits of the flag to read
 
 
     2) by specifying explicitly the bit selection mask
 
             python get_bitflag <flag-word> <bitmask>
 
        where :
 
         <flag-word> : the value that contains the bits to extract
         <mask>      : the bits selection mask
 
     All input values can be specified either in decimal ( by default ), hexadecimal or binary format.
     For using hexadecimal values, preceed the values by "0x" and for binary by "0b"
 
 Example :
 ---------
 
     REM : All the following forms are exactly equivalent and leads to 3. Only the base of the input values differs,
           and how the bits are selected
 
     --- flag selection by mask ---
 
         python get_bitflag.py 59 48
         python get_bitflag.py 0x3b 0x30
         python get_bitflag.py 0b111011 0b110000
 
     All will print out 3 : it selects the values the bits number 4 and 5  ( starting from 0 )
 
     --- flag selection by first bit and width ---
 
         python get_bitflag.py 59 4 2
         python get_bitflag.py 0x3b 4 2
         python get_bitflag.py 0b111011 4 2
 
     All will print out 3 : it constructs the mask for selecting the 2 bits starting from index 4, ie 110000
 
 Prerequisites :
 ---------------
     python >= 2.5 ; not tested but probably all versions
 
 Author :
 --------
     CGTD-ICARE/UDEV Nicolas PASCAL ( nicolas.pascal-at-icare.univ-lille.fr  )
 
 License :
 ---------
     This file must be used under the terms of the CeCILL.
     This source file is licensed as described in the file COPYING, which
     you should have received as part of this distribution.  The terms
     are also available at
     http://www.cecill.info/licences/Licence_CeCILL_V2-en.txt
 
 History :
 ---------
     v1.0.0 : 2009/12/07
         - Add comments, bad values checking, hexadecimal and binary inputs support
 
     v0.1.0 : 2009/12/04
         - creation
 """
 
 import sys
 
 # if set to true, print detailled intermediate results
 __DEBUG__=False
 
 def get_bitflag_by_range ( flag_word, first_bit, flag_width ) :
     """
     @brief read the bit flag values by specifying the first bit position and the flag width
     @warning if flag_width is null, an exception is raised
     @param flag_word flag word where are stored the bits to extract
     @param flag_width the number of bits of the flag
     @return the bit flag value
     """
     if flag_width <= 0 :
         raise ValueError ( "Invalid width value %d. Must be a strictly positive integer"%flag_width )
 
     # construct the bitflag selection mask
     mask = get_mask ( first_bit, flag_width )
     return get_bitflag_by_mask ( flag_word, mask )
 
 def get_bitflag_by_mask ( flag_word, mask ) :
     """
     @brief read the bit flag values by an explicit specification of the mask
     @param flag_word flag word where are stored the bits to extract
     @param mask the bits selection mask, specified as an integer
     @return the bit flag value
     """
     # find the position of the first not null bit of the mask
     first_bit_pos = get_first_bit_pos ( mask )
     # apply a binary AND between value and mask, then shift result ot first significant bit
     return ( ( flag_word & mask ) >> first_bit_pos )
 
 def get_first_bit_pos ( v ):
     """
     @brief return the position of the first significant ( ie not null ) bit of a value, by increasing weight
     @param v an integer value
     """
     if v == 0 :
         return 0
 
     bit_pos = 0
     while ( ( v & 1 ) == 0 ) :
         bit_pos = bit_pos + 1
         v = v >> 1
     return bit_pos
 
 def get_mask ( first_bit, flag_width ) :
     """
     @brief construct the mask of a bitfield specified by the position of the first significant bit
     and the width, in number of bits, of the flag to read
     @param first_bit position of the first significant bit
     @param flag_width number of bits, of the flag to read
     @return the mask value, as an integer matching the binary : "flag_width" number of 1 + " first_bit" number of 0"
     """
     mask = 0
     for exp in xrange( flag_width ):
         mask += 2 ** ( first_bit + exp )
     return mask
 
 def to_bin_str ( v ):
     """
     @brief return the binary representation of v as a string
     @param v an integer value
     @return the binary representation of v as a string
     """
     if v :
         return to_bin_str (  v >> 1 ) + str ( v & 1 )
     else :
         return ""
 
 def usage ():
     """
     @brief build the script usage string
     @return the script usage as a string
     """
     s  = ""
     s += "Usage :\n"
     s += "\tpython get_bitflag <flag-word> <1st-bit-index> <width>\n\n"
     s += "where :\n"
     s += "\t<flag-word>  : the value that contains the bits to extract\n"
     s += "\t<first_bit>  : the position of the first significant bit ( starting from 0 )\n"
     s += "\t<flag_width> : the number of bits of the flag to read\n"
     s += "\nOr\n"
     s += "\tpython get_bitflag <flag-word> <bitmask>\n\n"
     s += "where :\n"
     s += "\t<flag-word>  : the value that contains the bits to extract\n"
     s += "\t<bitmask>  : the bits selection mask\n\n"
     s += "All input values can be specified either in decimal ( by default ), hexadecimal or binary format.\n"
     s += "For using hexadecimal values, preceed the values by \"0x\" and for binary by \"0b\"\n"
     return s
 
 def main () :
     """
     @brief program entry point
     """
     if   len ( sys.argv ) == 3 :
         # --- read bits using an explicit mask --- #
         val  = int ( sys.argv[1], 0 )
         mask = int ( sys.argv[2], 0 )
         flag = get_bitflag_by_mask ( val, mask )
         if __DEBUG__ :
             # print all the details of the operation
             print "val  = %16s\t => %d"%( to_bin_str ( val ), val )
             print "mask = %16s\t => %d"%( to_bin_str ( mask), mask )
             print "res  = %16s\t => %d"%( to_bin_str ( flag ),  flag )
         else :
             # just print the result
             print flag
 
     elif len ( sys.argv ) == 4 :
         # --- read bits by specifying the 1st bit position and the flag width --- #
         val        = int ( sys.argv[1], 0 )
         first_bit  = int ( sys.argv[2], 0 )
         flag_width = int ( sys.argv[3], 0 )
         flag = get_bitflag_by_range ( val, first_bit, flag_width )
         if __DEBUG__ :
             # print all the details of the operation
             print "val  = %16s\t => %d"%( to_bin_str ( val ), val )
             print "bit_pos = %d width = %d"%( first_bit, flag_width )
             mask = get_mask ( first_bit, flag_width )
             print "mask = %16s\t => %d"%( to_bin_str ( mask), mask )
             print "res  = %16s\t => %d"%( to_bin_str ( flag ),  flag )
         else :
             # just print the result
             print flag
     else :
         print "Invalid Number of Arguments"
         print usage()
 
 if __name__ == "__main__":
   main()

More news

Highlights

AERIS/ICARE was migrated his good old FTP server to SFTP

For security reason, we are abandoning the FTP protocol in favor of SFTP on our distribution server. Depending of the way you are using this service, you can have to change the commands you are used to. Note that not all applications support the SFTP protocol, and some additional tools may need to be installed […]

01.03.2024

Tutorials

How to convert a matplotlib figure to a numpy array or a PIL image

Language/Format: Python
Description: For manipulating a figure build with matplotlib, it is sometimes requested to convert it in a format understandable by other python libraries. This can be useful for using scipy image filters or manually adding annotations for example.
This page details how to convert a matplotlib figure to a numpy 3D array of RGBA values, or directly to a PIL ( Python Imaging Library ) Image.
Author(s): Nicolas Pascal (ICARE)

10.02.2017

Tutorials

Reading a NetCDF file with Python, Matlab and R

Language/Format: MATLAB
Description: This page gives pieces of code to read data in a NetCDF file
Author(s): Aminata NDIAYE (ICARE)

15.12.2015

Search